Installation

MODAS is developed using Python3 language. The installation can be done with the following command.

Installation using conda

git clone https://github.com/liusy-jz/MODAS.git
cd MODAS
conda create -n modas python=3.7 -y
conda activate modas
python setup.py build
python setup.py install

conda install -y -c conda-forge r-rcppeigen r=3.6 rpy2
Rscript -e 'install.packages(c("data.table", "ggplot2", "ggsignif"), repos="https://cloud.r-project.org")'
Rscript -e 'install.packages("bigsnpr", dependence=T, repos="https://cloud.r-project.org")'
echo `pwd`|xargs -i Rscript -e 'install.packages("{}/utils/rMVP_1.0.6_modify.tar.gz",repos=NULL,type="source")'

echo "export PATH=`pwd`/utils:\$PATH" >> ~/.bashrc
source ~/.bashrc

Mannual Installation

#Depends: R(>=3.6), python(>=3.7)

git clone https://github.com/liusy-jz/MODAS.git
cd MODAS
python setup.py build
python setup.py install

pip3 install rpy2
Rscript -e 'install.packages(c("data.table", "ggplot2", "ggsignif"), repos="https://cloud.r-project.org")'
Rscript -e 'install.packages("bigsnpr",dependence=T, repos="https://cloud.r-project.org")'
echo `pwd`|xargs -i Rscript -e 'install.packages("{}/utils/rMVP_1.0.6_modify.tar.gz",repos=NULL,type="source")'

echo "export PATH=`pwd`/utils:\$PATH" >> ~/.bashrc
source ~/.bashrc