Summary in QTL1_chr1-45513914-48933677

QTL summarization criteria for whole -genome GWAS

Parameters and pipeline for filtering traits

QTL statistics table

QTL Statistics
QTL position 1:45513914-48933677
Peak SNP ID and position chr1.s_47984245, chr1.s_47984245
Number of total genes in the QTL 92
Enrichment significance vs background 5.91e-16

List of total genes in the QTL

Gene ID Alias ID Position Function
Zm00001d028752 Zm00001d028752 1:45537884-45539961:+ Probable protein phosphatase 2C 30
Zm00001d028753 Zm00001d028753 1:45571871-45574484:+ Mitochondrial succinate-fumarate transporter 1
Zm00001d028754 Zm00001d028754 1:45596914-45598386:+ mitogen-activated protein kinase kinase kinase 13
Zm00001d028755 Zm00001d028755 1:45602342-45605011:- Ran-binding protein 1 homolog a
Zm00001d028756 Zm00001d028756 1:45718251-45719477:+ Zm00001d028756
Zm00001d028757 Zm00001d028757 1:45718296-45723331:+ adenylylsulfate sulfohydrolase
Zm00001d028759 Zm00001d028759 1:45724685-45729020:- 2-oxo-acid carboxy-lyase
Zm00001d028760 Zm00001d028760 1:45800846-45801498:+ Zm00001d028760
Zm00001d028761 Zm00001d028761 1:45864595-45867995:+ Tetratricopeptide repeat (TPR)-like superfamily protein
Zm00001d028762 Zm00001d028762 1:45868763-45896495:+ fructose-2,6-bisphosphatase; fructose-6P, 2 kinase
Zm00001d028763 Zm00001d028763 1:45881566-45883965:- Retrovirus-related Pol polyprotein LINE-1
Zm00001d028765 Zm00001d028765 1:45932813-45935826:+ Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Zm00001d028766 Zm00001d028766 1:45936873-45940038:+ glutaminase; asparagine synthetase; L-aspartate:L-glutamine amido-ligase (AMP-forming)
Zm00001d028767 Zm00001d028767 1:45979356-45980392:+ Zm00001d028767
Zm00001d028768 Zm00001d028768 1:45981264-45982037:+ Zm00001d028768
Zm00001d028769 Zm00001d028769 1:46006891-46011253:+ tetratricopeptide repeat (TPR)-containing protein
Zm00001d028770 Zm00001d028770 1:46011526-46014654:- Protein kinase superfamily protein
Zm00001d028771 Zm00001d028771 1:46017582-46024037:- Ubiquitin-activating enzyme E1 2
Zm00001d028772 Zm00001d028772 1:46032247-46035061:+ Zm00001d028772
Zm00001d028773 Zm00001d028773 1:46156410-46170403:+ NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B
Zm00001d028774 Zm00001d028774 1:46171809-46175164:- Protein kinase superfamily protein
Zm00001d028775 Zm00001d028775 1:46181362-46183620:- Thioredoxin superfamily protein
Zm00001d028776 Zm00001d028776 1:46187281-46189614:- Thioredoxin superfamily protein
Zm00001d028777 Zm00001d028777 1:46189691-46192097:- male sterile9
Zm00001d028778 Zm00001d028778 1:46192688-46194446:+ Zm00001d028778
Zm00001d028779 Zm00001d028779 1:46196145-46197931:- Mitochondrial import inner membrane translocase subunit tim22
Zm00001d028780 Zm00001d028780 1:46200328-46201633:- Tetraspanin-18
Zm00001d028782 Zm00001d028782 1:46316119-46319693:+ Eukaryotic translation initiation factor 2 subunit alpha
Zm00001d028783 Zm00001d028783 1:46327873-46334046:+ Expressed protein%3B protein
Zm00001d028784 Zm00001d028784 1:46374276-46377587:+ Mitochondrial substrate carrier family protein
Zm00001d028785 Zm00001d028785 1:46379532-46380892:- DUF538 family protein
Zm00001d028786 Zm00001d028786 1:46381297-46384012:+ 40S ribosomal protein S7
Zm00001d028787 Zm00001d028787 1:46389553-46393554:- malonyl-CoA-ACP transacylase
Zm00001d028788 Zm00001d028788 1:46470270-46475798:- Zm00001d028788
Zm00001d028789 Zm00001d028789 1:46474470-46476763:+ Serine/arginine-rich splicing factor RSZ22
Zm00001d028791 Zm00001d028791 1:46477887-46491682:- ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL%3BAcc:A0A1D6JZP1]
Zm00001d028793 Zm00001d028793 1:46498733-46499395:- Abscisic acid receptor PYL5
Zm00001d028794 Zm00001d028794 1:46568384-46570597:+ Zm00001d028794
Zm00001d028795 Zm00001d028795 1:46571275-46573368:+ CTP:phosphatidate cytidyltransferase
Zm00001d028796 Zm00001d028796 1:46667081-46670026:+ meristematic receptor-like kinase
Zm00001d028797 Zm00001d028797 1:46672702-46675540:+ laccase
Zm00001d028798 Zm00001d028798 1:46679328-46679813:+ Zm00001d028798
Zm00001d028799 Zm00001d028799 1:46732004-46733203:+ Zm00001d028799
Zm00001d028801 Zm00001d028801 1:46819355-46823093:+ 26S proteasome regulatory subunit 4 homolog A
Zm00001d028802 Zm00001d028802 1:46826505-46831989:- Zm00001d028802
Zm00001d028803 Zm00001d028803 1:46852702-46858687:- Protein SCAR2
Zm00001d028804 Zm00001d028804 1:46898667-46903474:- U2 small nuclear ribonucleoprotein B''
Zm00001d028806 Zm00001d028806 1:46955327-46956671:+ xanthoxin dehydrogenase
Zm00001d028807 Zm00001d028807 1:46964052-46965897:- 40S ribosomal protein S28
Zm00001d028808 Zm00001d028808 1:47025643-47026431:- senescence associated gene 20
Zm00001d028809 Zm00001d028809 1:47129751-47131445:- PLAC8 family protein
Zm00001d028810 Zm00001d028810 1:47141802-47151051:+ L,L-diaminopimelate aminotransferase
Zm00001d028811 Zm00001d028811 1:47152651-47153994:- Zm00001d028811_T001.1; xyloglucan 6-xylosyltransferase
Zm00001d028812 Zm00001d028812 1:47211776-47217612:- zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein
Zm00001d028813 Zm00001d028813 1:47398578-47403781:+ transducin family protein / WD-40 repeat family protein
Zm00001d028814 Zm00001d028814 1:47417314-47418300:+ Pathogenesis-related protein 10 [Source:UniProtKB/TrEMBL%3BAcc:Q29SB6]
Zm00001d028815 Zm00001d028815 1:47440048-47441026:+ Pathogenesis-related protein 10 [Source:UniProtKB/TrEMBL%3BAcc:Q29SB6]
Zm00001d028816 Zm00001d028816 1:47445913-47446888:+ Pathogenesis-related protein 10
Zm00001d028818 Zm00001d028818 1:47566046-47589502:+ Calpain-type cysteine protease DEK1
Zm00001d028819 Zm00001d028819 1:47589891-47591591:- pectin methylesterase
Zm00001d028820 Zm00001d028820 1:47593455-47595021:- Chaperone DnaJ-domain superfamily protein
Zm00001d028821 Zm00001d028821 1:47599969-47601174:- F-box domain containing protein
Zm00001d028822 Zm00001d028822 1:47638498-47639724:- F-box domain containing protein expressed
Zm00001d028823 Zm00001d028823 1:47656747-47657982:- F-box domain containing protein expressed
Zm00001d028824 Zm00001d028824 1:47729285-47730406:+ UDP-D-galacturonate:1,4-a-poly-D-galacturonate 4-a-D-galacturonosyltransferase
Zm00001d028825 Zm00001d028825 1:47748642-47754005:+ UDP-xylose 4-epimerase
Zm00001d028826 Zm00001d028826 1:47787874-47789877:+ COBRA-like protein 7
Zm00001d028827 Zm00001d028827 1:47792436-47800509:+ Exonuclease DPD1 chloroplastic/mitochondrial
Zm00001d028828 Zm00001d028828 1:47876114-47877953:+ Zinc finger CCCH domain-containing protein 14
Zm00001d028829 Zm00001d028829 1:47880745-47883443:+ Calmodulin-binding protein 60 G
Zm00001d028830 Zm00001d028830 1:47982359-47988628:- P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
Zm00001d028831 Zm00001d028831 1:47989803-47991767:- beta-galactosidase
Zm00001d028832 Zm00001d028832 1:48068503-48082169:+ unspecific monooxygenase
Zm00001d028834 Zm00001d028834 1:48128232-48128960:+ Peroxisomal biogenesis factor 11 family protein
Zm00001d028835 Zm00001d028835 1:48144847-48146062:+ Zm00001d028835
Zm00001d028836 Zm00001d028836 1:48280481-48281402:+ Zm00001d028836
Zm00001d028837 Zm00001d028837 1:48282040-48282929:+ Anaphase-promoting complex subunit 11
Zm00001d028838 Zm00001d028838 1:48287887-48288669:+ Long cell-linked locus protein
Zm00001d028839 Zm00001d028839 1:48330999-48331432:- Hypersensitive-induced response protein 2
Zm00001d028840 Zm00001d028840 1:48333284-48337489:+ DUF4378 domain protein
Zm00001d028841 Zm00001d028841 1:48337931-48338995:+ Calmodulin-binding protein
Zm00001d028842 Zm00001d028842 1:48424617-48430126:- pericarp color2
Zm00001d028845 Zm00001d028845 1:48436711-48438133:- Transcription factor MYB12
Zm00001d028849 Zm00001d028849 1:48449345-48450829:- Transcription factor MYB12
Zm00001d028850 Zm00001d028850 1:48576539-48577961:- Transcription factor MYB12
Zm00001d028854 Zm00001d028854 1:48589178-48597585:- Transcription factor MYB12
Zm00001d028855 Zm00001d028855 1:48617654-48623952:- L,L-diaminopimelate aminotransferase
Zm00001d028856 Zm00001d028856 1:48625761-48627434:- Retrovirus-related Pol polyprotein LINE-1
Zm00001d028859 Zm00001d028859 1:48750838-48751576:- Zm00001d028859
Zm00001d028861 Zm00001d028861 1:48754653-48756047:+ Zm00001d028861
Zm00001d028862 Zm00001d028862 1:48853966-48855453:- Glycine-rich protein family
Zm00001d028863 Zm00001d028863 1:48930452-48937928:+ BRCT domain-containing protein