Summary in QTL3_chr1-47640089-48914580

QTL summarization criteria for whole -genome GWAS

Parameters and pipeline for filtering traits

QTL statistics table

QTL Statistics
QTL position 1:47640089-48914580
Peak SNP ID and position chr1.s_48424403, chr1.s_48424403
Number of total genes in the QTL 28
Enrichment significance vs background 1.56e-17

List of total genes in the QTL

Gene ID Alias ID Position Function
Zm00001d028823 Zm00001d028823 1:47656747-47657982:- F-box domain containing protein expressed
Zm00001d028824 Zm00001d028824 1:47729285-47730406:+ UDP-D-galacturonate:1,4-a-poly-D-galacturonate 4-a-D-galacturonosyltransferase
Zm00001d028825 Zm00001d028825 1:47748642-47754005:+ UDP-xylose 4-epimerase
Zm00001d028826 Zm00001d028826 1:47787874-47789877:+ COBRA-like protein 7
Zm00001d028827 Zm00001d028827 1:47792436-47800509:+ Exonuclease DPD1 chloroplastic/mitochondrial
Zm00001d028828 Zm00001d028828 1:47876114-47877953:+ Zinc finger CCCH domain-containing protein 14
Zm00001d028829 Zm00001d028829 1:47880745-47883443:+ Calmodulin-binding protein 60 G
Zm00001d028830 Zm00001d028830 1:47982359-47988628:- P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
Zm00001d028831 Zm00001d028831 1:47989803-47991767:- beta-galactosidase
Zm00001d028832 Zm00001d028832 1:48068503-48082169:+ unspecific monooxygenase
Zm00001d028834 Zm00001d028834 1:48128232-48128960:+ Peroxisomal biogenesis factor 11 family protein
Zm00001d028835 Zm00001d028835 1:48144847-48146062:+ Zm00001d028835
Zm00001d028836 Zm00001d028836 1:48280481-48281402:+ Zm00001d028836
Zm00001d028837 Zm00001d028837 1:48282040-48282929:+ Anaphase-promoting complex subunit 11
Zm00001d028838 Zm00001d028838 1:48287887-48288669:+ Long cell-linked locus protein
Zm00001d028839 Zm00001d028839 1:48330999-48331432:- Hypersensitive-induced response protein 2
Zm00001d028840 Zm00001d028840 1:48333284-48337489:+ DUF4378 domain protein
Zm00001d028841 Zm00001d028841 1:48337931-48338995:+ Calmodulin-binding protein
Zm00001d028842 Zm00001d028842 1:48424617-48430126:- pericarp color2
Zm00001d028845 Zm00001d028845 1:48436711-48438133:- Transcription factor MYB12
Zm00001d028849 Zm00001d028849 1:48449345-48450829:- Transcription factor MYB12
Zm00001d028850 Zm00001d028850 1:48576539-48577961:- Transcription factor MYB12
Zm00001d028854 Zm00001d028854 1:48589178-48597585:- Transcription factor MYB12
Zm00001d028855 Zm00001d028855 1:48617654-48623952:- L,L-diaminopimelate aminotransferase
Zm00001d028856 Zm00001d028856 1:48625761-48627434:- Retrovirus-related Pol polyprotein LINE-1
Zm00001d028859 Zm00001d028859 1:48750838-48751576:- Zm00001d028859
Zm00001d028861 Zm00001d028861 1:48754653-48756047:+ Zm00001d028861
Zm00001d028862 Zm00001d028862 1:48853966-48855453:- Glycine-rich protein family